I built CB with the adviced patches,
./configure --enable-contrib --prefix=$HOME
make
make install
I bundled using the shell script and moving all installation to Contents, nothing except icon in Resources.
CB crashed at startup.
I removed all plugins from share/codeblocks and CB started but complained about plugins failed to load.
I moved plugins back one by one, and found that the any of these plugins made CB crash:
codecompletion.zip
scriptedwizard.zip
todo.zip
wxsmith.zip
However, I did not need to do any manual zipping of manifests, so this seems to work.
One observation was that it complains about "not found" in two passes, first pass on libcodecompletion.zip, second pass on libprofiler.zip, libscriptedwizard.zip, libtodo.zip, libwxsmith.zip.
profiler.zip was actually missing from the set.